Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0018_2.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0018_2.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TCCTTAGTCGCTAGCA-P0018_2, CCTCAGTTCGATTTGA-P0018_2, TAGCATATCATGGCTG-P0018_2, CAGGTCCAGCTACTGG-P0018_2, AGGTGAATCGATTATG-P0018_2 (top 5 of 3415 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0018_2.h5ad.gz 815.76 MB 2caa4f31077f0f8b67bad7a98e2cd7a1
P0018_2.h5ad.gz.tbi 699.07 KB 8602bc2bf2fa939782ddc3062fddc4c5
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 925a78a60b2b3eff7aa4ee9f5ddc16fc
statistics/