Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0021_4.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0021_4.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TAGTTTGAGGTTACAC-P0021_4, AATCCATCATAGCTTG-P0021_4, ACCTAAATCGTTACAA-P0021_4, GTTAAGCTCACTCAAA-P0021_4, CTACTTAGTCGACTAA-P0021_4 (top 5 of 2257 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0021_4.h5ad.gz 398.46 MB e78039874d8abe50fa8c373b1b5d4b52
P0021_4.h5ad.gz.tbi 583.52 KB 7599a876671ff452f188c1279c466522
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 602f96e7febd59b4ce8319637224ab22
statistics/