Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0022_3.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0022_3.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GATGACTTCCCGAACA-P0022_3, CGGTGAACAATTGACT-P0022_3, CAAACACTCATCACTT-P0022_3, TGAAGCAAGTAAGGGC-P0022_3, CCTTCGGTCAAAGGCA-P0022_3 (top 5 of 5463 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0022_3.h5ad.gz 1.42 GB 6eb7171d44876591193de658e3ad107b
P0022_3.h5ad.gz.tbi 881.77 KB cb2706054d37550a4979b83205c468d8
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 932d1835dfbd93598a831f0aa30e0ee3
statistics/