Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0023_4.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0023_4.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GTTGTTGCAATTTGGT-P0023_4, ACCTAAATCATGCAAC-P0023_4, ATTGGTTCATTGCAGC-P0023_4, CATTATGAGTCAATCA-P0023_4, CCCGTTGTCACAAGCT-P0023_4 (top 5 of 6124 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0023_4.h5ad.gz 1.78 GB 9ebfb9b07e3ed6c7e93e2471091146df
P0023_4.h5ad.gz.tbi 972.32 KB 3e8c5330c4ba646d6f3cb92163fdd86f
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 7a795636a6abc524f8a66a3cac666f73
statistics/