Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0024_1.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0024_1.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell ATGTCAATCTCAATGA-P0024_1, ACTCCTCAGTAAAGGT-P0024_1, GAGGTTAAGACTTATG-P0024_1, CTGATCACAACCTGGT-P0024_1, AGGAACGGTTTCGCGC-P0024_1 (top 5 of 6705 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0024_1.h5ad.gz 1.9 GB 6c4380f8fe53eb2a3658141b1b2d5444
P0024_1.h5ad.gz.tbi 1001.88 KB 85d5d2bcd3fc90cca2d085ea7418176c
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB dc691a8573299fb4768afcf09d504f6d
statistics/