Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0028_1.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0028_1.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGGCCTAGTTATCGAG-P0028_1, TGCACTTGTCCAAGAC-P0028_1, ACCAATATCAATGACC-P0028_1, TCTGGCTTCTGCAACG-P0028_1, TTCGTGCTCCGCACAA-P0028_1 (top 5 of 2307 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0028_1.h5ad.gz 658.44 MB 23a4c9d41e0e016b0d8ade0adeb10858
P0028_1.h5ad.gz.tbi 654.86 KB 7aa01021f5d6fb2e6691d69f6b88b6e8
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 6e4d3561d548f754d09c2b66ee54be1f
statistics/