Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0028_1content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0028_1
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AAGTTTGTCGGCTAGC-P0028_1, CGCTTAACACACAATT-P0028_1, CACTAGCCATAGACCC-P0028_1, GGGCCTAGTTATCGAG-P0028_1, CATTTGTTCTTCAATC-P0028_1 (top 5 of 3802 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0028_1.gz 1.33 GB 146aacca2f9ab51eb8b6cc4e0c62ea20
P0028_1.gz.tbi 873.12 KB 23939c6e2462da0d4c5c8e543cc72a72
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.3 KB 761332eeb7ac0633bd6ec316209aa7b5
statistics/