Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0034_1.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0034_1.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GATTGCAGTGTTAAAC-P0034_1, TCCTAGTGTGCTGTAA-P0034_1, ACAACAGAGCACCACA-P0034_1, AGCAAGGGTCCTTAGT-P0034_1, GTGCTGGGTATACTGG-P0034_1 (top 5 of 272 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0034_1.h5ad.gz 95.56 MB 5a3d6d86fb7b168fa7248a7800e10ac4
P0034_1.h5ad.gz.tbi 624.07 KB 56819b7490477ca0b1fa90ed68e3c999
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB ccaef998eac6f8bee234e0fc0639c6b0
statistics/