Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0038_1.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0038_1.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GATGCTTAGTTTGCGG-P0038_1, AGAAACCCAGTTTGTG-P0038_1, GAGGACTAGCGCCTTT-P0038_1, CTTGAACAGGCGAATA-P0038_1, AAGCCACGTGCTCCAC-P0038_1 (top 5 of 824 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0038_1.h5ad.gz 341.11 MB 6b3559a8c5bfc92bad3a12ecf6af41be
P0038_1.h5ad.gz.tbi 578.09 KB 91c8c5593fd76a4e8d28f0ba2911e0d4
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 3af9739fca829b9f7de904636774531d
statistics/