Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0043_1.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0043_1.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TGTGGCCAGCTTTGTT-P0043_1, GGGATTAAGGAGGCAT-P0043_1, CGTTAGTAGCAAGACA-P0043_1, ATATGGTGTGTGCACG-P0043_1, GCTCTGGCAATTATGC-P0043_1 (top 5 of 4185 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0043_1.h5ad.gz 823.76 MB 016d20f6a8611540684e0166e1dbec23
P0043_1.h5ad.gz.tbi 704.71 KB a090cb5d8f0744e50eedfe1a134a359e
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 17dc03d72edffb5e7ef1bf52e48289f0
statistics/