Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0045_2.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0045_2.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GCCCAAATCTAATTGG-P0045_2, CCTTACTCAATGCGCT-P0045_2, GCTAGCTCAACCCTCC-P0045_2, AGTGCGGAGAGGGACT-P0045_2, TTGAGCTAGTTACCGG-P0045_2 (top 5 of 420 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0045_2.h5ad.gz 113.23 MB f892135e886669d8cf4c006bb779a0dd
P0045_2.h5ad.gz.tbi 651.37 KB 1ac5d49841d4d8ed7be5f83040f1f4bd
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB ace0a861296606191a3d67f9650fc661
statistics/