Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0052_1.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0052_1.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TTCAACCGTAAGGTCC-P0052_1, CTGTGTGAGCTAAGTC-P0052_1, GCGCAATGTTAGCGTA-P0052_1, TTAGGCTAGCAGGTTT-P0052_1, CCTCCTGAGGGTGAAC-P0052_1 (top 5 of 3679 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0052_1.h5ad.gz 1.41 GB 47e5dd5192cc08c15ad9a884846ff7ed
P0052_1.h5ad.gz.tbi 905.24 KB 6e4a7747969feb98004e317130fba7da
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB d6aa14da704eed63f9a3b73477f096d1
statistics/