Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0052_2.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0052_2.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AAGCATGAGGTGTTAC-P0052_2, CTATTGAAGAGGAAGG-P0052_2, TTGTGTGCAAGGTCGA-P0052_2, TTTGACCGTCAGGAAG-P0052_2, CATTCATTCTCTAGCC-P0052_2 (top 5 of 5295 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0052_2.h5ad.gz 1.44 GB 64387c840473e64051be746889374cc0
P0052_2.h5ad.gz.tbi 916.88 KB aa2ec87838602aa58af1b05c3ec4efb8
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 4327efb56a1f71e32c87d01d91142d88
statistics/