Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0058_2.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0058_2.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CCCGTAAAGCGCATTG-P0058_2, ATTGTGATCGGTTTGG-P0058_2, GGTCTTGAGGCGCATC-P0058_2, ACGACAAAGGTCCTAG-P0058_2, CAATGAACAACACCTA-P0058_2 (top 5 of 3542 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0058_2.h5ad.gz 1.57 GB 7e6a51b45ec4f3ca7ed9d6035c994cf3
P0058_2.h5ad.gz.tbi 935.95 KB 9a4415b740e616a2f20e98fcc28e2e55
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB dadf8a1a19bba2ff5907b15973fb8236
statistics/