Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0059_3.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0059_3.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGTAATTGTTATCGAG-P0059_3, ACAGTATGTGTTTGCT-P0059_3, TTTGGCTGTAAGGTCC-P0059_3, CCTCAAACAGCATGAG-P0059_3, TCGTTAGCAAGTTATC-P0059_3 (top 5 of 550 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0059_3.h5ad.gz 200.38 MB 55b5f87d45723f6a53a662999818f0fa
P0059_3.h5ad.gz.tbi 540.41 KB 28722d5058d19aecceb7a416ef57f40c
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 6370a5d0205ae91be6968ee16bb51675
statistics/