Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0059_4.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0059_4.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GTAAGCAAGGTTACAC-P0059_4, TTTGCGGAGTATTGCA-P0059_4, TACGTTAAGGCATGTT-P0059_4, TTGACATCAATTAACC-P0059_4, ATTTGTGAGCCGCTTT-P0059_4 (top 5 of 575 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0059_4.h5ad.gz 223.99 MB 2eeb4bb75ea8b0e2b75b8e358913349a
P0059_4.h5ad.gz.tbi 541.46 KB e6cdad35cc5e9fe692f452b24067326d
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 148c2f1dbbcf642f4c52e22207060fa1
statistics/