Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0060_4.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0060_4.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GTGCTGGGTGCGCAAT-P0060_4, CGCTAATAGTTTGCGG-P0060_4, CTCTCACAGCTACTGG-P0060_4, ATGGCTTAGTGTGATC-P0060_4, TCCGCCATCTCCTCTT-P0060_4 (top 5 of 2097 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0060_4.h5ad.gz 638.73 MB 27da369cd0bd4d06b5ad4d42041e63ef
P0060_4.h5ad.gz.tbi 646.84 KB 486dba2a28397fe0cf750de2dd162b24
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB d1446fcfa30f68d75e033fa5c3df94ab
statistics/