Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0061_1.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0061_1.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TCAAGAACAACTAGAA-P0061_1, ATGAATGCAGCAAATA-P0061_1, CATCAGCCAATATAGG-P0061_1, GCAAGCCTCTACTAAG-P0061_1, CTAGTCGAGATTGAGG-P0061_1 (top 5 of 947 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0061_1.h5ad.gz 330.63 MB b0979e7e4060fa72a3d6811e19ab0e11
P0061_1.h5ad.gz.tbi 574.86 KB 72829fea5cfc28dd684b8b3d0f4affbb
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB c4b995e24c3a449a5bd6aa04ca528eda
statistics/