Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0061_2.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0061_2.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CTGTAACAGACAAGTG-P0061_2, CCGCCAACATGCTATG-P0061_2, CCAGACTCAGAACCGA-P0061_2, CCTAATCGTGATGAAA-P0061_2, TTGGCTGAGGGATGCG-P0061_2 (top 5 of 1158 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0061_2.h5ad.gz 443.54 MB 7e8ca72a7d17c59f0de8565b4afdc403
P0061_2.h5ad.gz.tbi 599.14 KB 86d927d05e1da2ff144d6029ae820659
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 7c24b38a72c9b9f572bb469ae366c70e
statistics/