Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0065_1.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0065_1.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AGTCAGGCAAGCGAGC-P0065_1, AAGCTAGAGCTATGAC-P0065_1, TATGAAGCAGAGAGCC-P0065_1, TGATGACTCGGTCAGC-P0065_1, TGTATCGCAAAGGTAC-P0065_1 (top 5 of 2686 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0065_1.h5ad.gz 1.28 GB be86fa0bdc7bb4cb8eb4f890a81977f5
P0065_1.h5ad.gz.tbi 853.62 KB 870c71d1a7d432e4bd0b7fb15ebf073b
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 194882e12d7492426601d667ee918d8d
statistics/