Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0065_2.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0065_2.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TTGACATCACAAACTT-P0065_2, TAACAAGCACCAGGTT-P0065_2, TGGTTCTGTTGTAACG-P0065_2, TAGCTTAAGTAGGATG-P0065_2, TTCATTCAGCATGAAG-P0065_2 (top 5 of 2603 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0065_2.h5ad.gz 1.19 GB af852a34bc1c98c8f859cd6f973fa440
P0065_2.h5ad.gz.tbi 821.48 KB 22e73f8b05526b4c0b213af277aa27c6
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 4f22bb3ca46e9361d10401d31c89c6bf
statistics/