Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0066_1.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0066_1.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CCAAATCAGCACAGGG-P0066_1, GCGGTTATCACTTTAC-P0066_1, CTCATCATCATGGTTA-P0066_1, AAACGCGCATAATGTC-P0066_1, ATTACTGAGGAGCACG-P0066_1 (top 5 of 1449 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0066_1.h5ad.gz 964.02 MB 4b245b1176f808ca73aeb63c706ad3a3
P0066_1.h5ad.gz.tbi 750.27 KB 9febb7a86d162530ce7b32f1d430728a
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 84158b177cf6fdfbe1c36067e92f6184
statistics/