Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0066_2.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0066_2.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AAGTCTATCGATTTGA-P0066_2, TATATCCTCCTTTACG-P0066_2, GGTCCTGCACTGGCCA-P0066_2, GGCCTCTGTAGGATTT-P0066_2, GCGGTTATCTGGCAAT-P0066_2 (top 5 of 1500 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0066_2.h5ad.gz 861.4 MB 71c24cf5246f85978af59814962b4e83
P0066_2.h5ad.gz.tbi 716.49 KB b7f1a7776991e72ffd977c84e1db0940
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 711751517fb5205a389978aee8e0b3a2
statistics/