Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0066_3.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0066_3.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGGAATATCCTAAGAC-P0066_3, CCAAACCCAACATAAG-P0066_3, GGCTATGTCACAGCCA-P0066_3, AGCCTCCGTAACCTAG-P0066_3, GCCTTACTCGCTTGCT-P0066_3 (top 5 of 4898 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0066_3.h5ad.gz 2.0 GB 29488e73f07e2c3707b2d3e3a2bd03d2
P0066_3.h5ad.gz.tbi 1.01 MB 8e1552b91aeaa048403f925faf6239c2
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 8050d62abdc54395a35136fb5455932b
statistics/