Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0067_3.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0067_3.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GTTCCTTCATGAGTTT-P0067_3, CTCCTGAGTACAATGT-P0067_3, TTTCTCACAGGAACTG-P0067_3, CCGTTACTCAAACCTA-P0067_3, GATTAGTGTGCTAGCG-P0067_3 (top 5 of 3453 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0067_3.h5ad.gz 1.41 GB 5cb6d2f5ba137c5dc50fbcfd3378ba08
P0067_3.h5ad.gz.tbi 870.82 KB e2ab5c70f6ed6592d31f3307bf3006a4
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB aa7715a6205461fb45b627340fd22814
statistics/