Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0067_5.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0067_5.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CTAGTGAGTTTCGCGC-P0067_5, AGCTAGTTCCCATAGG-P0067_5, TGCTCCGTCCAGGTCA-P0067_5, AGAATCGAGCATTAGC-P0067_5, TTCATCCCAAACCTTG-P0067_5 (top 5 of 2484 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0067_5.h5ad.gz 898.94 MB 9418f074325d72eb79758b8fe4c3a2b0
P0067_5.h5ad.gz.tbi 725.79 KB f81d8aa53c9307cfe69ffa3a161bee1d
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 2ab70e379a20c60dffe5d031594d57a5
statistics/