Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0068_3.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0068_3.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CTCATCATCCCTGTTA-P0068_3, CCGCACACACAACAAA-P0068_3, CGATTTGCAAGTTATC-P0068_3, GTGAATCTCCGCTAGA-P0068_3, GTAGTTTCACAAAGAC-P0068_3 (top 5 of 2616 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0068_3.h5ad.gz 748.16 MB 24bd8d10b3708d6b8cdd1ad07e7b293d
P0068_3.h5ad.gz.tbi 680.08 KB 27c19e720bbf031c9aa2b73f9c22f1c7
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB e7d7d5031b43bd3e37677ed079b0f3f6
statistics/