Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0068_4.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0068_4.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AGCAGGTAGGCTACTG-P0068_4, TTGGGCCAGGCACAGG-P0068_4, CTAAGTCAGTTATCTC-P0068_4, ACCTTGCTCCACCTGT-P0068_4, GGCATTAGTGAGCAAG-P0068_4 (top 5 of 1195 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0068_4.h5ad.gz 430.8 MB 7638425120e67c9f3549f4c85222c997
P0068_4.h5ad.gz.tbi 597.28 KB 28f442d4c66bea8159345b7f623de3dc
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 86a4df6f09e71b8564e08aa19a8b2446
statistics/