Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0070_3.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0070_3.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GCCCGTTGTCATAGAT-P0070_3, ACCCGGTAGACTAAGG-P0070_3, TTACACCGTGTGAGAG-P0070_3, CAGCCAATCATGACCG-P0070_3, CCCTCAGTCTAAGTGC-P0070_3 (top 5 of 606 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0070_3.h5ad.gz 225.97 MB 0b7dae82c1ee47306e94f26d0932ca86
P0070_3.h5ad.gz.tbi 547.45 KB 41e61e3606e660998314a87dec8c703c
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 3af5441549dbd86ecb15efec4de0fb41
statistics/