Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0070_4.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0070_4.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CAACTAGGTTTACTTG-P0070_4, CGGTTTCTCTTGGACG-P0070_4, TGACTTAAGCTCGCTT-P0070_4, ATCCTGACAGCTAATT-P0070_4, ATGACGAAGTAACTCA-P0070_4 (top 5 of 933 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0070_4.h5ad.gz 316.23 MB 4d8e26d455f0fbb638a245258eea13b1
P0070_4.h5ad.gz.tbi 567.52 KB 53a0ae477a4ad6cdf7a4eb8b6c665a13
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 118a2c388e23865e49ee795b0772e574
statistics/