Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0071_3.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0071_3.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CCAACCAAGCCTGTGA-P0071_3, GCGGATACAGCATTAT-P0071_3, GAGCAAATCCTGGCTT-P0071_3, CGGAGTCTCCTGTTCA-P0071_3, AGTCGCATCTTGTCCA-P0071_3 (top 5 of 814 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0071_3.h5ad.gz 413.77 MB bf16807455943d1f815ca70caeca9815
P0071_3.h5ad.gz.tbi 589.41 KB e8dec36e9b5a001d3a36ab03beeca740
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 58e19466df7faeb219f76b1b2dc35956
statistics/