Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0072_2.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0072_2.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GATGGCTGTAGGTTTG-P0072_2, TAGGTGCGTTCACTGT-P0072_2, GCTGTGATCGCTATAA-P0072_2, ACCCAACCACGAACAG-P0072_2, GAGGACTAGCGATACT-P0072_2 (top 5 of 4622 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0072_2.h5ad.gz 1.75 GB 7ca0bc5d5d472bc3c8127935200df198
P0072_2.h5ad.gz.tbi 956.11 KB fb813ebbe53e69455ffc914b699dbbd8
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 81abe815587848d90f7f928ee03710df
statistics/