Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0074_2.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0074_2.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TGAGGCACAAATGCCC-P0074_2, TGGCCTTTCCCGTTGT-P0074_2, TAGTTGTCAACACTTG-P0074_2, TGAGCCGGTTATGTGG-P0074_2, GTTCCTGGTAATCCCT-P0074_2 (top 5 of 1024 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0074_2.h5ad.gz 473.35 MB 36bc23d7de8f48f5c8d921b5cb09c31f
P0074_2.h5ad.gz.tbi 606.93 KB 38034b70a2a7a3bd94d85147f00cd31f
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 239074027d52d7f6556270cd6349d1f0
statistics/