Resource
| Id |
summary/johansen2025Crossspecies/rna_expression_matrix/HMBA-10xMultiome-BG-Aligned/20260331/HMBA-10xMultiome-BG-Aligned-rawcontent_copy |
| Type |
ann_data |
| Version |
0 |
| Summary |
Expression matrix HMBA-10xMultiome-BG-Aligned-raw
|
| Description |
|
| Labels |
- assay: 10x_Multiome
- brain_region: basal ganglia
- data_types: gene_expression
- dataset: johansen2025Crossspecies
- directory: HMBA-10xMultiome-BG-Aligned
- measure: raw
- modalities: RNA
- processing_level: processed_raw
- release_date: 20260331
- resolution: single_cell
- sequencing_platform: Illumina
- species: Aligned
- vendor: 10x_Genomics
|
AnnData description
AnnData object with n_obs × n_vars = 1896133 × 16630 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/johansen2025Crossspecies/expression_matrix/HMBA-10xMultiome-BG-Aligned/20260331/HMBA-10xMultiome-BG-Aligned-raw/HMBA-10xMultiome-BG-Aligned-raw.h5ad'
obs: 'cell_barcode', 'barcoded_cell_sample_label', 'donor_label', 'library_label', 'alignment_job_id'
var: 'gene_symbol'
layers: None (.X)
obs description
| Columns |
count |
unique |
top |
freq |
| cell_barcode |
1896133 |
680274 |
AGCCAGTGTGACATAT |
14 |
| barcoded_cell_sample_label |
1896133 |
417 |
936_A03 |
15121 |
| donor_label |
1896133 |
22 |
CJ23.56.003 |
178386 |
| library_label |
1896133 |
417 |
L8XR_211118_02_A04 |
15121 |
| alignment_job_id |
1896133 |
302 |
250114 |
91541 |
var description
| Columns |
count |
unique |
top |
freq |
| gene_symbol |
16630 |
16630 |
GRHPR |
1 |
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