Resource
| Id |
summary/johansen2025Crossspecies/rna_expression_matrix/HMBA-10xMultiome-BG/20250630/HMBA-10xMultiome-BG-Macaque-log2content_copy |
| Type |
ann_data |
| Version |
0 |
| Summary |
Expression matrix HMBA-10xMultiome-BG-Macaque-log2
|
| Description |
|
| Labels |
- assay: 10x_Multiome
- brain_region: basal ganglia
- data_types: gene_expression
- dataset: johansen2025Crossspecies
- directory: HMBA-10xMultiome-BG
- gene_models: reference/Macaque/gene_models/Mmul_10_NCBI_RefSeq
- measure: log2
- modalities: RNA
- processing_level: processed_log2
- reference_genome: reference/Macaque/genome/Mmul_10
- release_date: 20250630
- resolution: single_cell
- sequencing_platform: Illumina
- species: Macaque
- vendor: 10x_Genomics
|
AnnData description
AnnData object with n_obs × n_vars = 839102 × 35219 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/johansen2025Crossspecies/expression_matrix/HMBA-10xMultiome-BG/20250630/HMBA-10xMultiome-BG-Macaque-log2/HMBA-10xMultiome-BG-Macaque-log2.h5ad'
obs: 'cell_barcode', 'library_label', 'barcoded_cell_sample_label', 'alignment_job_id'
var: 'gene_symbol', 'gene_identifier'
layers: None (.X)
obs description
| Columns |
count |
unique |
top |
freq |
| cell_barcode |
839102 |
502287 |
GTTTGTAAGACTTACA |
9 |
| library_label |
839102 |
90 |
L8XR_211118_02_A04 |
20000 |
| barcoded_cell_sample_label |
839102 |
90 |
936_A03 |
20000 |
| alignment_job_id |
839102 |
90 |
44c17a26ca9c6f204075ddc6f10e1029fdcea4c5 |
20000 |
var description
| Columns |
count |
unique |
top |
freq |
| gene_symbol |
35219 |
34806 |
TRNAA-AGC |
20 |
| gene_identifier |
35219 |
35216 |
NCBIGene:693935 |
2 |
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