Resource
| Id |
summary/johansen2025Crossspecies/rna_expression_matrix/HMBA-10xMultiome-BG/20250630/HMBA-10xMultiome-BG-Marmoset-log2content_copy |
| Type |
ann_data |
| Version |
0 |
| Summary |
Expression matrix HMBA-10xMultiome-BG-Marmoset-log2
|
| Description |
|
| Labels |
- assay: 10x_Multiome
- brain_region: basal ganglia
- data_types: gene_expression
- dataset: johansen2025Crossspecies
- directory: HMBA-10xMultiome-BG
- gene_models: reference/Marmoset/gene_models/calJac240_pri_NCBI_RefSeq
- measure: log2
- modalities: RNA
- processing_level: processed_log2
- reference_genome: reference/Marmoset/genome/calJac240_pri
- release_date: 20250630
- resolution: single_cell
- sequencing_platform: Illumina
- species: Marmoset
- vendor: 10x_Genomics
|
AnnData description
AnnData object with n_obs × n_vars = 414575 × 35787 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/johansen2025Crossspecies/expression_matrix/HMBA-10xMultiome-BG/20250630/HMBA-10xMultiome-BG-Marmoset-log2/HMBA-10xMultiome-BG-Marmoset-log2.h5ad'
obs: 'cell_barcode', 'library_label', 'barcoded_cell_sample_label', 'alignment_job_id'
var: 'gene_symbol'
layers: None (.X)
obs description
| Columns |
count |
unique |
top |
freq |
| cell_barcode |
414575 |
317823 |
AAGCCTTAGTTATCCT |
6 |
| library_label |
414575 |
123 |
LPLCXR_240710_1_F5 |
9499 |
| barcoded_cell_sample_label |
414575 |
123 |
P0052_2 |
9499 |
| alignment_job_id |
414575 |
8 |
250114 |
120220 |
var description
| Columns |
count |
unique |
top |
freq |
| gene_symbol |
35787 |
35478 |
TRNAC-GCA |
20 |
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