Resource
| Id |
summary/johansen2025Crossspecies/rna_expression_matrix/HMBA-MERSCOPE-H22.30.001-BG/20250930/MERSCOPE-H22.30.001-BG-log2content_copy |
| Type |
ann_data |
| Version |
0 |
| Summary |
Expression matrix MERSCOPE-H22.30.001-BG-log2
|
| Description |
|
| Labels |
- assay: MERSCOPE
- brain_region: basal ganglia
- data_types: gene_expression
- dataset: johansen2025Crossspecies
- directory: HMBA-MERSCOPE-H22.30.001-BG
- gene_models: reference/Human/gene_models/GENCODE/49/basic/ALL
- measure: log2
- modalities: RNA
- processing_level: processed_log2
- reference_genome: reference/Human/genome/ucsc-hg38
- release_date: 20250930
- resolution: single_cell
- sequencing_platform: Illumina
- species: Human
- vendor: Vizgen
|
AnnData description
AnnData object with n_obs × n_vars = 5431560 × 314 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/johansen2025Crossspecies/expression_matrix/HMBA-MERSCOPE-H22.30.001-BG/20250930/MERSCOPE-H22.30.001-BG-log2/MERSCOPE-H22.30.001-BG-log2.h5ad'
obs: 'brain_section_label', 'brain_section_barcode'
var: 'gene_symbol'
layers: None (.X)
obs description
| Columns |
count |
unique |
top |
freq |
mean |
std |
min |
25% |
50% |
75% |
max |
| brain_section_label |
5431560 |
95 |
H22.30.001.CX.19.03.07.01 |
105485 |
NaN |
NaN |
NaN |
NaN |
NaN |
NaN |
NaN |
| brain_section_barcode |
5431560.0 |
NaN |
NaN |
NaN |
1325569872.055579 |
24533599.576211 |
1304618482.0 |
1308461491.0 |
1322691967.0 |
1326499925.0 |
1426549599.0 |
var description
| Columns |
count |
unique |
top |
freq |
| gene_symbol |
299 |
299 |
ABCG2 |
1 |
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