Resource
| Id |
summary/johansen2025Crossspecies/rna_expression_matrix/HMBA-MERSCOPE-QM23.50.001-BG/20250630/MERSCOPE-QM23.50.001-BG-rawcontent_copy |
| Type |
ann_data |
| Version |
0 |
| Summary |
Expression matrix MERSCOPE-QM23.50.001-BG-raw
|
| Description |
|
| Labels |
- assay: MERSCOPE
- brain_region: basal ganglia
- data_types: gene_expression
- dataset: johansen2025Crossspecies
- directory: HMBA-MERSCOPE-QM23.50.001-BG
- gene_models: reference/Macaque/gene_models/Mmul_10_NCBI_RefSeq
- measure: raw
- modalities: RNA
- processing_level: processed_raw
- reference_genome: reference/Macaque/genome/Mmul_10
- release_date: 20250630
- resolution: single_cell
- sequencing_platform: Illumina
- species: Macaque
- vendor: Vizgen
|
AnnData description
AnnData object with n_obs × n_vars = 3255402 × 315 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/johansen2025Crossspecies/expression_matrix/HMBA-MERSCOPE-QM23.50.001-BG/20250630/MERSCOPE-QM23.50.001-BG-raw/MERSCOPE-QM23.50.001-BG-raw.h5ad'
obs: 'brain_section_label', 'brain_section_barcode'
var: 'gene_symbol'
layers: None (.X)
obs description
| Columns |
count |
unique |
top |
freq |
mean |
std |
min |
25% |
50% |
75% |
max |
| brain_section_label |
3255402 |
86 |
QM23.50.001.CX.44.03.05.02 |
109664 |
NaN |
NaN |
NaN |
NaN |
NaN |
NaN |
NaN |
| brain_section_barcode |
3255402.0 |
NaN |
NaN |
NaN |
1293040558.791512 |
11551278.995842 |
1291809799.0 |
1291812310.0 |
1291813811.0 |
1291815483.0 |
1401811732.0 |
var description
| Columns |
count |
unique |
top |
freq |
| gene_symbol |
315 |
315 |
ABO |
1 |
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