Resource
| Id |
summary/johansen2025Crossspecies/rna_expression_matrix/HMBA-Macaque-PatchSeq/20260228/HMBA-Macaque-PatchSeq-BG-log2content_copy |
| Type |
ann_data |
| Version |
0 |
| Summary |
Expression matrix HMBA-Macaque-PatchSeq-BG-log2
|
| Description |
|
| Labels |
- assay: Patch-seq
- brain_region: basal ganglia
- data_types: gene_expression
- dataset: johansen2025Crossspecies
- directory: HMBA-Macaque-PatchSeq
- gene_models: reference/Macaque/gene_models/Mmul_10_NCBI_RefSeq
- measure: log2
- modalities: RNA
- processing_level: processed_log2
- reference_genome: reference/Macaque/genome/Mmul_10
- release_date: 20260228
- resolution: single_cell
- sequencing_platform: Illumina
- species: Macaque
- vendor: unknown
|
AnnData description
AnnData object with n_obs × n_vars = 717 × 39670 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/johansen2025Crossspecies/expression_matrix/HMBA-Macaque-PatchSeq/20260228/HMBA-Macaque-PatchSeq-BG-log2/HMBA-Macaque-PatchSeq-BG-log2.h5ad'
obs: 'library_label', 'library_aliquot_label', 'barcoded_cell_sample_label', 'donor_label', 'alignment_id'
var: 'gene_symbol'
layers: None (.X)
obs description
| Columns |
count |
unique |
top |
freq |
mean |
std |
min |
25% |
50% |
75% |
max |
| library_label |
717 |
717 |
L8S4_220222_04_H05 |
1 |
NaN |
NaN |
NaN |
NaN |
NaN |
NaN |
NaN |
| library_aliquot_label |
717 |
717 |
AB-S40302_S424_E1-50 |
1 |
NaN |
NaN |
NaN |
NaN |
NaN |
NaN |
NaN |
| barcoded_cell_sample_label |
717 |
717 |
P4S4_220131_155_A01 |
1 |
NaN |
NaN |
NaN |
NaN |
NaN |
NaN |
NaN |
| donor_label |
717 |
70 |
QN22.26.036 |
42 |
NaN |
NaN |
NaN |
NaN |
NaN |
NaN |
NaN |
| alignment_id |
717.0 |
NaN |
NaN |
NaN |
1255179372.426778 |
82648430.822883 |
1197960274.0 |
1200714169.0 |
1202946876.0 |
1298266086.0 |
1465001319.0 |
var description
| Columns |
count |
unique |
top |
freq |
| gene_symbol |
39668 |
39662 |
CYP2C18 |
2 |
Files