Resource
| Id |
summary/johansen2025Crossspecies/rna_expression_matrix/HMBA-Xenium-CJ23.56.004-BG/20250630/Xenium-CJ23.56.004-BG-log2content_copy |
| Type |
ann_data |
| Version |
0 |
| Summary |
Expression matrix Xenium-CJ23.56.004-BG-log2
|
| Description |
|
| Labels |
- assay: Xenium
- brain_region: basal ganglia
- data_types: gene_expression
- dataset: johansen2025Crossspecies
- directory: HMBA-Xenium-CJ23.56.004-BG
- gene_models: reference/Marmoset/gene_models/calJac240_pri_NCBI_RefSeq
- measure: log2
- modalities: RNA
- processing_level: processed_log2
- reference_genome: reference/Marmoset/genome/calJac240_pri
- release_date: 20250630
- resolution: single_cell
- sequencing_platform: Illumina
- species: Marmoset
- vendor: 10x_Genomics
|
AnnData description
AnnData object with n_obs × n_vars = 1355089 × 300 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/johansen2025Crossspecies/expression_matrix/HMBA-Xenium-CJ23.56.004-BG/20250630/Xenium-CJ23.56.004-BG-log2/Xenium-CJ23.56.004-BG-log2.h5ad'
obs: 'brain_section_label', 'brain_section_barcode'
var: 'gene_symbol'
layers: None (.X)
obs description
| Columns |
count |
unique |
top |
freq |
mean |
std |
min |
25% |
50% |
75% |
max |
| brain_section_label |
1355089 |
46 |
CJ23.56.004.CX.43.01.07 |
63164 |
NaN |
NaN |
NaN |
NaN |
NaN |
NaN |
NaN |
| brain_section_barcode |
1355089.0 |
NaN |
NaN |
NaN |
1384448198.067081 |
2432234.177837 |
1382033286.0 |
1382036910.0 |
1386591529.0 |
1386593056.0 |
1388175626.0 |
var description
| Columns |
count |
unique |
top |
freq |
| gene_symbol |
300 |
300 |
ABI3BP |
1 |
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