Resource
| Id | summary/johansen2025Crossspecies/supplementary_table/S6.1/GWAS |
|---|---|
| Type | data_frame |
| Version | 0 |
| Summary |
MAGMA results. Cluster-level associations across brain cell types. - GWAS
|
| Description |
Gene-set analysis results from MAGMA, testing for associations between genetic risk for each phenotype and gene expression profiles across cell clusters. Each row represents a cell cluster, and columns include the test statistic, p-value. Results are shown for multiple phenotypes and ancestries (SCZ only). |
| Labels |
|
| Columns | count | unique | top | freq | mean | std | min | 25% | 50% | 75% | max |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Phenotype | 9 | 7 | SCZ | 3 | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| Publication | 9 | 7 | Trubetskoy et al. | 3 | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| Ancestry | 9 | 4 | European | 6 | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| Cases | 8.0 | NaN | NaN | NaN | 91473.5 | 136422.176319 | 6152.0 | 12611.25 | 47235.5 | 78749.25 | 412305.0 |
| Controls | 8 | 8 | 401,577 (+ 46,828 proxy cases) | 1 | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| Total Individuals | 9.0 | NaN | NaN | NaN | 616600.555556 | 665409.785873 | 10070.0 | 30761.0 | 487511.0 | 840309.0 | 2000702.0 |
| Total SNPs | 9.0 | NaN | NaN | NaN | 9593737.777778 | 4818295.873471 | 6315331.0 | 6939126.0 | 7363302.0 | 9653210.0 | 21101104.0 |
Files
| Filename | Size | md5 |
|---|---|---|
| Supplemental Table S6.1.xlsx | 246.27 KB | 7c68756d4d5ffcce51a06e176f8fd2c6 |
| genomic_resource.yaml | 686.0 B | 8c7ae7915bae9db7e65ef7186c1662d5 |
| statistics/ |