Resource
| Id | summary/johansen2025Crossspecies/supplementary_table/S6.1/SCZ_2022_afram |
|---|---|
| Type | data_frame |
| Version | 0 |
| Summary |
MAGMA results. Cluster-level associations across brain cell types. - SCZ_2022_afram
|
| Description |
Gene-set analysis results from MAGMA, testing for associations between genetic risk for each phenotype and gene expression profiles across cell clusters. Each row represents a cell cluster, and columns include the test statistic, p-value. Results are shown for multiple phenotypes and ancestries (SCZ only). |
| Labels |
|
| Columns | count | unique | top | freq | mean | std | min | 25% | 50% | 75% | max |
|---|---|---|---|---|---|---|---|---|---|---|---|
| VARIABLE | 453 | 453 | Human-1 | 1 | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| TYPE | 453 | 1 | COVAR | 453 | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| NGENES | 453.0 | NaN | NaN | NaN | 16398.0 | 0.0 | 16398.0 | 16398.0 | 16398.0 | 16398.0 | 16398.0 |
| BETA | 453.0 | NaN | NaN | NaN | -0.21927 | 3.168003 | -9.6064 | -2.2102 | -0.10917 | 1.7208 | 10.26 |
| BETA_STD | 453.0 | NaN | NaN | NaN | -0.000104 | 0.007375 | -0.024195 | -0.004943 | -0.00029 | 0.004643 | 0.019718 |
| SE | 453.0 | NaN | NaN | NaN | 3.112531 | 1.065121 | 0.82411 | 2.2523 | 3.1207 | 3.9704 | 5.736 |
| P | 453.0 | NaN | NaN | NaN | 0.505198 | 0.296366 | 0.002677 | 0.25792 | 0.51635 | 0.75503 | 0.99985 |
Files
| Filename | Size | md5 |
|---|---|---|
| Supplemental Table S6.1.xlsx | 246.27 KB | 7c68756d4d5ffcce51a06e176f8fd2c6 |
| genomic_resource.yaml | 706.0 B | e62afe1bb4704dc74c5968d8699ee929 |
| statistics/ |