Resource
| Id | summary/johansen2025Crossspecies/supplementary_table/S6.1/SCZ_2022_european |
|---|---|
| Type | data_frame |
| Version | 0 |
| Summary |
MAGMA results. Cluster-level associations across brain cell types. - SCZ_2022_european
|
| Description |
Gene-set analysis results from MAGMA, testing for associations between genetic risk for each phenotype and gene expression profiles across cell clusters. Each row represents a cell cluster, and columns include the test statistic, p-value. Results are shown for multiple phenotypes and ancestries (SCZ only). |
| Labels |
|
| Columns | count | unique | top | freq | mean | std | min | 25% | 50% | 75% | max |
|---|---|---|---|---|---|---|---|---|---|---|---|
| VARIABLE | 453 | 453 | Human-1 | 1 | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| TYPE | 453 | 1 | COVAR | 453 | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| NGENES | 453.0 | NaN | NaN | NaN | 16427.0 | 0.0 | 16427.0 | 16427.0 | 16427.0 | 16427.0 | 16427.0 |
| BETA | 453.0 | NaN | NaN | NaN | 8.018247 | 10.559708 | -12.044 | -0.31459 | 6.6048 | 14.951 | 43.452 |
| BETA_STD | 453.0 | NaN | NaN | NaN | 0.012624 | 0.02133 | -0.04436 | -0.000869 | 0.014703 | 0.028073 | 0.063254 |
| SE | 453.0 | NaN | NaN | NaN | 3.976838 | 1.348516 | 1.0368 | 2.899 | 3.9784 | 5.0563 | 7.366 |
| P | 453.0 | NaN | NaN | NaN | 0.283626 | 0.37883 | 0.0 | 0.001051 | 0.050266 | 0.53762 | 1.0 |
Files
| Filename | Size | md5 |
|---|---|---|
| Supplemental Table S6.1.xlsx | 246.27 KB | 7c68756d4d5ffcce51a06e176f8fd2c6 |
| genomic_resource.yaml | 712.0 B | c9e659331e5db338e29c5f5a0ddd0efd |
| statistics/ |