Resource

Id summary/zemke2023Conserved/atac_fragments/2C_rep1_deepcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • age: P56
  • assay: 10x_Multiome
  • brain_region: mop
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: Mop_2C
  • modalities: ATAC
  • neun_enriched: no
  • processing_level: aligned
  • reference_genome: reference/Mouse/genome/GRCm39
  • resolution: single_nucleus
  • sample_id: Mop_2C_rep1
  • sequencing_platform: Illumina
  • sex: M
  • species: mouse
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AGAGGATGTGATTTGG-1, ACCGGCTAGTCATTTC-1, GTGTTCCTCAGGAACA-1, CAAGTAACAAGCGATG-1, GAGGCCTTCACTTTAC-1 (top 5 of 584330 values)
count int

count
HISTOGRAM FOR count [1, 191]

Fragments

Chromosome Fragments
all chromosomes 262530903
chr1 18539872
chr2 20659627
chr3 13566611
chr4 16439372
chr5 17190465
chr6 14704123
chr7 15314118
chr8 13879503
chr9 14879547
chr10 13395522
chr11 17360618
chr12 11751536
chr13 11620666
chr14 10907423
chr15 11444556
chr16 9520870
chr17 10591811
chr18 8814745
chr19 7077188
chrX 4697312
chrY 78561
GL456210.1 1052
GL456211.1 1639
GL456212.1 1107
GL456216.1 25455
GL456219.1 2
GL456221.1 1015
GL456233.1 6179
GL456350.1 21
GL456354.1 80
JH584292.1 296
JH584294.1 10
JH584295.1 2635
JH584296.1 20
JH584297.1 48
JH584299.1 721
JH584304.1 56577

Fragment lengths

global fragment-length histogram

Files

Filename Size md5
4DNFIIOVSHQI.tsv.gz 2.63 GB 2b85a1397ad3c42481335b196cefc9c5
4DNFIIOVSHQI.tsv.gz.tbi 1.1 MB 6ddef65284a0bd194ca190bded47d00a
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.4 KB 7e21ab92da5447ebb18fc8bce15a1e6f
statistics/