Resource

Id summary/zemke2023Conserved/atac_fragments/2C_rep2_deepcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • age: P56
  • assay: 10x_Multiome
  • brain_region: mop
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: Mop_2C
  • modalities: ATAC
  • neun_enriched: no
  • processing_level: aligned
  • reference_genome: reference/Mouse/genome/GRCm39
  • resolution: single_nucleus
  • sample_id: Mop_2C_rep2
  • sequencing_platform: Illumina
  • sex: M
  • species: mouse
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TAGACCAGTTGGCGTG-1, CTGGATGTCCTGGTGA-1, TCCATTGTCAAGCTTA-1, GATAATCGTTCACTGT-1, AGCACTTAGATTGAGG-1 (top 5 of 630075 values)
count int

count
HISTOGRAM FOR count [1, 49]

Fragments

Chromosome Fragments
all chromosomes 427156416
chr1 29850171
chr2 33465492
chr3 21991084
chr4 26866556
chr5 28066372
chr6 23731333
chr7 25259191
chr8 22577567
chr9 24252111
chr10 21777390
chr11 28554851
chr12 19203222
chr13 18771263
chr14 17540289
chr15 18738262
chr16 15351075
chr17 17365556
chr18 14324988
chr19 11573368
chrX 7605521
chrY 109114
GL456210.1 2239
GL456211.1 3645
GL456212.1 2413
GL456216.1 45695
GL456219.1 7
GL456221.1 2116
GL456233.1 9890
GL456350.1 21
GL456354.1 162
JH584292.1 631
JH584293.1 3
JH584294.1 9
JH584295.1 4797
JH584296.1 70
JH584297.1 95
JH584299.1 1626
JH584303.1 2
JH584304.1 108219

Fragment lengths

global fragment-length histogram

Files

Filename Size md5
4DNFIC4UCY74.tsv.gz 4.26 GB 263666f1b20413e403a3224e4c9f0afc
4DNFIC4UCY74.tsv.gz.tbi 1.45 MB cafe8d2874c39e707dc9f04a872eb7c4
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.4 KB 44752932d4322eb2460c32e9e5386943
statistics/