Resource

Id summary/zemke2023Conserved/atac_fragments/3C_rep1_deepcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • age: P56
  • assay: 10x_Multiome
  • brain_region: mop
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: Mop_3C
  • modalities: ATAC
  • neun_enriched: no
  • processing_level: aligned
  • reference_genome: reference/Mouse/genome/GRCm39
  • resolution: single_nucleus
  • sample_id: Mop_3C_rep1
  • sequencing_platform: Illumina
  • sex: M
  • species: mouse
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AGTTTGCAGCGTGCGT-1, CTAATCGCAATTAACC-1, TCCCTGGTCGTTCACC-1, GTGTAACTCCTGGTGA-1, TTCAACCGTAAGCTTG-1 (top 5 of 629356 values)
count int

count
HISTOGRAM FOR count [1, 19]

Fragments

Chromosome Fragments
all chromosomes 372342300
chr1 26390036
chr2 29122192
chr3 19111745
chr4 23747695
chr5 24334757
chr6 20988276
chr7 22130113
chr8 19924433
chr9 20865143
chr10 18582272
chr11 24214362
chr12 16683387
chr13 16407703
chr14 15606230
chr15 16390307
chr16 13373493
chr17 15091814
chr18 12568826
chr19 9962469
chrX 6568491
chrY 113410
GL456210.1 3400
GL456211.1 5681
GL456212.1 4004
GL456216.1 23339
GL456219.1 3
GL456221.1 3521
GL456233.1 9049
GL456350.1 25
GL456354.1 237
JH584292.1 604
JH584293.1 1
JH584294.1 6
JH584295.1 2744
JH584296.1 86
JH584297.1 120
JH584299.1 2431
JH584304.1 109895

Fragment lengths

global fragment-length histogram

Files

Filename Size md5
4DNFINM22IDL.tsv.gz 3.79 GB 212b0cbf965ca21fa48710c50820bfe9
4DNFINM22IDL.tsv.gz.tbi 1.32 MB 1a6c33bc27b238465a4d47e2a7174f0d
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.4 KB f1101eb584bd94c5c643353d702990b7
statistics/