Resource

Id summary/zemke2023Conserved/atac_fragments/3C_rep2_deepcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • age: P56
  • assay: 10x_Multiome
  • brain_region: mop
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: Mop_3C
  • modalities: ATAC
  • neun_enriched: no
  • processing_level: aligned
  • reference_genome: reference/Mouse/genome/GRCm39
  • resolution: single_nucleus
  • sample_id: Mop_3C_rep2
  • sequencing_platform: Illumina
  • sex: M
  • species: mouse
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GAGTGATCACCTGCTC-1, AAGCCTGTCCCATAGG-1, ATGAATGCAGACAAAC-1, ACAACAGAGCAAGGGT-1, GGTGTCCAGTGCACGC-1 (top 5 of 646662 values)
count int

count
HISTOGRAM FOR count [1, 965]

Fragments

Chromosome Fragments
all chromosomes 497474473
chr1 35167331
chr2 39095249
chr3 25477039
chr4 31499749
chr5 32562963
chr6 27856880
chr7 29326221
chr8 26341459
chr9 28115351
chr10 25116055
chr11 32890820
chr12 22319034
chr13 21864574
chr14 20617512
chr15 22011145
chr16 17899449
chr17 20106322
chr18 16787631
chr19 13326882
chrX 8758975
chrY 144580
GL456210.1 2797
GL456211.1 4582
GL456212.1 3231
GL456216.1 44676
GL456219.1 4
GL456221.1 2718
GL456233.1 12176
GL456350.1 40
GL456354.1 209
JH584292.1 680
JH584293.1 3
JH584294.1 11
JH584295.1 4782
JH584296.1 63
JH584297.1 120
JH584299.1 2062
JH584303.1 2
JH584304.1 111096

Fragment lengths

global fragment-length histogram

Files

Filename Size md5
4DNFIJKQHLR1.tsv.gz 4.98 GB e4da020d33f1dbcd86b514982087099c
4DNFIJKQHLR1.tsv.gz.tbi 1.6 MB af34f145ef287d84d03e9188e06c1ccd
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.4 KB 8ef008aa4af3f3e34c151e09bdcb3c11
statistics/