Resource

Id summary/zemke2023Conserved/atac_fragments/4B_rep2_deepcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • age: P56
  • assay: 10x_Multiome
  • brain_region: mop
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: Mop_4B
  • modalities: ATAC
  • neun_enriched: no
  • processing_level: aligned
  • reference_genome: reference/Mouse/genome/GRCm39
  • resolution: single_nucleus
  • sample_id: Mop_4B_rep2
  • sequencing_platform: Illumina
  • sex: M
  • species: mouse
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CCAAACCCAAGGATTA-1, TACGGTTAGCTTAGCG-1, GAGGCCTTCCGCCTCA-1, TTTAGGATCGTGCCTT-1, GGTCTTTGTACTGATG-1 (top 5 of 651849 values)
count int

count
HISTOGRAM FOR count [1, 30]

Fragments

Chromosome Fragments
all chromosomes 530393342
chr1 37004604
chr2 41661703
chr3 26772363
chr4 33717346
chr5 34798110
chr6 29405640
chr7 31889424
chr8 28060048
chr9 30006270
chr10 26700457
chr11 35669686
chr12 23592143
chr13 23028363
chr14 21724763
chr15 23665302
chr16 19092279
chr17 21696657
chr18 17740967
chr19 14421982
chrX 9360670
chrY 162540
GL456210.1 3014
GL456211.1 5011
GL456212.1 3291
GL456216.1 53916
GL456219.1 7
GL456221.1 3000
GL456233.1 13099
GL456350.1 38
GL456354.1 197
JH584292.1 799
JH584293.1 1
JH584294.1 5
JH584295.1 5192
JH584296.1 61
JH584297.1 136
JH584298.1 1
JH584299.1 2386
JH584304.1 131871

Fragment lengths

global fragment-length histogram

Files

Filename Size md5
4DNFIE6BNNPU.tsv.gz 5.29 GB 24b5bd9d0c0d3f217eac0874e4a321fe
4DNFIE6BNNPU.tsv.gz.tbi 1.67 MB d73e6bd6e74f18d35ea66dcb7a19c8d7
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.4 KB be3d9655b726fcf2fa4ddb7e02ab46ea
statistics/