Resource

Id summary/zemke2023Conserved/atac_fragments/5D_rep1_deepcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • age: P56
  • assay: 10x_Multiome
  • brain_region: mop
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: Mop_5D
  • modalities: ATAC
  • neun_enriched: no
  • processing_level: aligned
  • reference_genome: reference/Mouse/genome/GRCm39
  • resolution: single_nucleus
  • sample_id: Mop_5D_rep1
  • sequencing_platform: Illumina
  • sex: M
  • species: mouse
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TCCGCCATCAATGACC-1, GGTTGAGCATCTTGAG-1, CCAGCCTGTACAATGT-1, GATAAAGGTCAGGCAT-1, TCAGTAGGTGGACCTG-1 (top 5 of 684165 values)
count int

count
HISTOGRAM FOR count [1, 130]

Fragments

Chromosome Fragments
all chromosomes 998924742
chr1 70258276
chr2 78624382
chr3 50750720
chr4 63377046
chr5 65223693
chr6 55511191
chr7 59502437
chr8 52635440
chr9 56507083
chr10 50422570
chr11 66712269
chr12 44573979
chr13 43660514
chr14 41176201
chr15 44484295
chr16 35781145
chr17 40675231
chr18 33647149
chr19 27234711
chrX 17523596
chrY 286612
GL456210.1 3944
GL456211.1 6529
GL456212.1 4371
GL456216.1 101171
GL456221.1 3821
GL456233.1 24673
GL456350.1 95
GL456354.1 246
JH584292.1 1103
JH584293.1 1
JH584294.1 31
JH584295.1 10260
JH584296.1 80
JH584297.1 148
JH584299.1 2756
JH584304.1 196973

Fragment lengths

global fragment-length histogram

Files

Filename Size md5
4DNFIN5LUMH6.tsv.gz 9.72 GB 11f3acc684c9ff1f3e234af490386761
4DNFIN5LUMH6.tsv.gz.tbi 2.5 MB 27670b49e6c6c9aaf588b941724a85dc
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.4 KB 2ea5069e70d56a210a7d3be305a644f7
statistics/