Resource

Id summary/zemke2023Conserved/atac_fragments/5D_rep2_deepcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • age: P56
  • assay: 10x_Multiome
  • brain_region: mop
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: Mop_5D
  • modalities: ATAC
  • neun_enriched: no
  • processing_level: aligned
  • reference_genome: reference/Mouse/genome/GRCm39
  • resolution: single_nucleus
  • sample_id: Mop_5D_rep2
  • sequencing_platform: Illumina
  • sex: M
  • species: mouse
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TGCTTTAGTTTGGGTA-1, TCTATGTTCTCAATTC-1, ACTAACTCAAAGCGGC-1, AGCCTGGGTACAAAGA-1, TTAGACTCAGCAAGTG-1 (top 5 of 609464 values)
count int

count
HISTOGRAM FOR count [1, 47]

Fragments

Chromosome Fragments
all chromosomes 328226155
chr1 22776792
chr2 25810039
chr3 16350006
chr4 20925297
chr5 21548832
chr6 18093170
chr7 20070506
chr8 17281502
chr9 18718253
chr10 16391613
chr11 22244600
chr12 14608285
chr13 14150077
chr14 13373529
chr15 14657950
chr16 11789099
chr17 13588361
chr18 10928150
chr19 9035347
chrX 5666377
chrY 84596
GL456210.1 1403
GL456211.1 2191
GL456212.1 1578
GL456216.1 37289
GL456219.1 1
GL456221.1 1249
GL456233.1 8105
GL456350.1 48
GL456354.1 100
JH584292.1 399
JH584293.1 2
JH584294.1 7
JH584295.1 3511
JH584296.1 31
JH584297.1 57
JH584299.1 1011
JH584304.1 76792

Fragment lengths

global fragment-length histogram

Files

Filename Size md5
4DNFI4UMFWGG.tsv.gz 3.31 GB 95a29fb42a09f7f06896c336a93a3a82
4DNFI4UMFWGG.tsv.gz.tbi 1.25 MB 929cab8d0c0192205e2b680b5dadc89c
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.4 KB d965fec972e6a4ce394c0704f09e2d51
statistics/